OpenBio*: aj224122-biojava.swiss

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1ID   DOF37_ARATH             Reviewed;         296 AA.
2AC   Q43385; Q8GYW3; Q9SAF9;
3DT   19-OCT-2002, integrated into UniProtKB/Swiss-Prot.
4DT   01-JUN-2001, sequence version 2.
5DT   04-DEC-2007, entry version 60.
6DE   Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination
7DE   1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a).
8GN   Name=DOF3.7; Synonyms=BBFA, DAG1; OrderedLocusNames=At3g61850;
9GN   ORFNames=F21F14.20;
10OS   Arabidopsis thaliana (Mouse-ear cress) (Arabidopsis thaliana (L.) Heynh.).
11OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
12OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
13OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
14OX   NCBI_TaxID=3702;
15RN   [1]
16RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1).
17RC   STRAIN=cv. Columbia, and cv. Wassilewskija;
18RX   MEDLINE=96367665;
19RA   de Paolis A., Sabatini S., de Pascalis L., Costantino P., Capone I.;
20RT   "A rolB regulatory factor belongs to a new class of single zinc finger
21RT   plant proteins.";
22RL   Plant J. 10:215-223(1996).
23RN   [2]
24RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
25RC   STRAIN=cv. Wassilewskija;
26RX   MEDLINE=20107030;
27RA   Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P., Vittorioso
28RA   P.;
29RT   "Identification and disruption of an Arabidopsis zinc finger gene
30RT   controlling seed germination.";
31RL   Genes Dev. 14:28-33(2000).
32RN   [3]
33RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
34RC   STRAIN=cv. Columbia;
35RX   MEDLINE=21016720;
36RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
37RA   Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry
38RA   M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
39RA   Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
40RA   Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel
41RA   C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
42RA   Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
43RA   Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati
44RA   B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
45RA   Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
46RA   Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke
47RA   R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse
48RA   A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A.,
49RA   Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd
50RA   S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L.,
51RA   Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii
52RA   C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van
53RA   Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
54RA   Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
55RA   Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto
56RA   S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara
57RA   M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo
58RA   S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
59RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
60RL   Nature 408:820-822(2000).
61RN   [4]
62RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
63RC   STRAIN=cv. Columbia;
64RX   MEDLINE=21932900;
65RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., Nakajima
66RA   M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y., Kawai J.,
67RA   Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K., Shinagawa A.,
68RA   Shinozaki K.;
69RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
70RL   Science 296:141-145(2002).
71RN   [5]
72RP   CHARACTERIZATION.
73RX   MEDLINE=21831160;
74RA   Papi M., Sabatini S., Altamura M.M., Hennig L., Schaefer E., Costantino P.,
75RA   Vittorioso P.;
76RT   "Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects
77RT   response to light and integrity of the testa of Arabidopsis seeds.";
78RL   Plant Physiol. 128:411-417(2002).
79RN   [6]
80RP   GENE FAMILY, AND NOMENCLATURE.
81RX   MEDLINE=22364319;
82RA   Yanagisawa S.;
83RT   "The Dof family of plant transcription factors.";
84RL   Trends Plant Sci. 7:555-560(2002).
85CC   -!- FUNCTION: Transcription factor specifically involved in the
86CC       maternal control of seed germination. Regulates transcription by
87CC       binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the
88CC       inactivity of a component that would be activated to trigger
89CC       germination as a consequence of red light perception.
90CC   -!- SUBCELLULAR LOCATION: Nucleus (Probable).
91CC   -!- ALTERNATIVE PRODUCTS:
92CC       Event=Alternative splicing; Named isoforms=2;
93CC       Name=1;
94CC         IsoId=Q43385-1; Sequence=Displayed;
95CC       Name=2;
96CC         IsoId=Q43385-2; Sequence=VSP_008898;
97CC         Note=No experimental confirmation available;
98CC   -!- TISSUE SPECIFICITY: Expressed in the phloem of the mother plant,
99CC       including in roots, stem, leaves and flowers, but not present in
100CC       the seed and embryo. In maturing siliques, found all through the
101CC       funiculus connecting the placenta to the ovule, but not in the
102CC       ovule.
103CC   -!- DEVELOPMENTAL STAGE: Turned off in siliques when they reached full
104CC       maturation. Not expressed in developing or mature embryos.
105CC   -!- MISCELLANEOUS: The regulatory role of DOF3.7/DAG1 appears to be
106CC       opposite to that of DOF2.5/DAG2. Both zinc finger proteins may act
107CC       on a maternal switch that controls seed germination, possibly by
108CC       regulating the same gene(s).
109CC   -!- SIMILARITY: Contains 1 Dof-type zinc finger.
110CC   -----------------------------------------------------------------------
111CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
112CC   Distributed under the Creative Commons Attribution-NoDerivs License
113CC   -----------------------------------------------------------------------
114DR   EMBL; X97941; CAA66600.2; -; mRNA.
115DR   EMBL; AJ224122; CAB40190.1; -; Genomic_DNA.
116DR   EMBL; AL138642; CAB71892.1; -; Genomic_DNA.
117DR   EMBL; AK117352; BAC42022.1; -; mRNA.
118DR   PIR; T47977; T47977.
119DR   RefSeq; NP_191744.1; -.
120DR   UniGene; At.989; -.
121DR   TRANSFAC; T02699; -.
122DR   GeneID; 825358; -.
123DR   GenomeReviews; BA000014_GR; AT3G61850.
124DR   KEGG; ath:AT3G61850; -.
125DR   GeneFarm; 4410; 446.
126DR   TAIR; At3g61850; -.
127DR   ArrayExpress; Q43385; -.
128DR   GermOnline; AT3G61850; Arabidopsis thaliana.
129DR   InterPro; IPR003851; Znf_Dof.
130DR   Pfam; PF02701; zf-Dof; 1.
131DR   PROSITE; PS01361; ZF_DOF_1; 1.
132DR   PROSITE; PS50884; ZF_DOF_2; 1.
133PE   1: Evidence at protein level;
134KW   Alternative splicing; Complete proteome; DNA-binding; Germination;
135KW   Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc;
136KW   Zinc-finger.
137FT   CHAIN         1    296       Dof zinc finger protein DOF3.7.
138FT                                /FTId=PRO_0000074283.
139FT   ZN_FING      74    128       Dof-type.
140FT   COMPBIAS    173    176       Poly-His.
141FT   VAR_SEQ       1     12       Missing (in isoform 2).
142FT                                /FTId=VSP_008898.
143SQ   SEQUENCE   296 AA;  32966 MW;  0D733352776272EB CRC64;
144     MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT
145     ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG
146     GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHALEL
147     LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI
148     NSNQRAQDNN DDMNGASRVL FPFSDMKELS STTQEKSHGN NTYWNGMFSN TGGSSW
149//