| 1 | ID DOF37_ARATH Reviewed; 296 AA. |
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| 2 | AC Q43385; Q8GYW3; Q9SAF9; |
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| 3 | DT 19-OCT-2002, integrated into UniProtKB/Swiss-Prot. |
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| 4 | DT 01-JUN-2001, sequence version 2. |
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| 5 | DT 04-DEC-2007, entry version 60. |
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| 6 | DE Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination |
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| 7 | DE 1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a). |
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| 8 | GN Name=DOF3.7; Synonyms=BBFA, DAG1; OrderedLocusNames=At3g61850; |
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| 9 | GN ORFNames=F21F14.20; |
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| 10 | OS Arabidopsis thaliana (Mouse-ear cress). |
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| 11 | OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; |
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| 12 | OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; |
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| 13 | OC rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis. |
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| 14 | OX NCBI_TaxID=3702; |
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| 15 | RN [1] |
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| 16 | RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1). |
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| 17 | RC STRAIN=cv. Columbia, and cv. Wassilewskija; |
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| 18 | RX MEDLINE=96367665; PubMed=8771779; |
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| 19 | RA de Paolis A., Sabatini S., de Pascalis L., Costantino P., Capone I.; |
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| 20 | RT "A rolB regulatory factor belongs to a new class of single zinc finger |
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| 21 | RT plant proteins."; |
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| 22 | RL Plant J. 10:215-223(1996). |
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| 23 | RN [2] |
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| 24 | RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1). |
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| 25 | RC STRAIN=cv. Wassilewskija; |
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| 26 | RX MEDLINE=20107030; PubMed=10640273; |
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| 27 | RA Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P., |
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| 28 | RA Vittorioso P.; |
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| 29 | RT "Identification and disruption of an Arabidopsis zinc finger gene |
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| 30 | RT controlling seed germination."; |
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| 31 | RL Genes Dev. 14:28-33(2000). |
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| 32 | RN [3] |
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| 33 | RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
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| 34 | RC STRAIN=cv. Columbia; |
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| 35 | RX MEDLINE=21016720; PubMed=11130713; DOI=10.1038/35048706; |
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| 36 | RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., |
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| 37 | RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., |
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| 38 | RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., |
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| 39 | RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., |
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| 40 | RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., |
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| 41 | RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., |
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| 42 | RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., |
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| 43 | RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., |
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| 44 | RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., |
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| 45 | RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., |
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| 46 | RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., |
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| 47 | RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., |
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| 48 | RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., |
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| 49 | RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., |
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| 50 | RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., |
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| 51 | RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., |
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| 52 | RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., |
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| 53 | RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., |
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| 54 | RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., |
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| 55 | RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., |
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| 56 | RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., |
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| 57 | RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., |
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| 58 | RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., |
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| 59 | RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., |
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| 60 | RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., |
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| 61 | RA Watanabe A., Yamada M., Yasuda M., Tabata S.; |
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| 62 | RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis |
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| 63 | RT thaliana."; |
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| 64 | RL Nature 408:820-822(2000). |
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| 65 | RN [4] |
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| 66 | RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). |
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| 67 | RC STRAIN=cv. Columbia; |
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| 68 | RX MEDLINE=21932900; PubMed=11910074; DOI=10.1126/science.1071006; |
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| 69 | RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., |
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| 70 | RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., |
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| 71 | RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., |
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| 72 | RA Shibata K., Shinagawa A., Shinozaki K.; |
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| 73 | RT "Functional annotation of a full-length Arabidopsis cDNA collection."; |
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| 74 | RL Science 296:141-145(2002). |
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| 75 | RN [5] |
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| 76 | RP CHARACTERIZATION. |
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| 77 | RX MEDLINE=21831160; PubMed=11842145; DOI=10.1104/pp.010488; |
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| 78 | RA Papi M., Sabatini S., Altamura M.M., Hennig L., Schaefer E., |
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| 79 | RA Costantino P., Vittorioso P.; |
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| 80 | RT "Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects |
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| 81 | RT response to light and integrity of the testa of Arabidopsis seeds."; |
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| 82 | RL Plant Physiol. 128:411-417(2002). |
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| 83 | RN [6] |
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| 84 | RP GENE FAMILY, AND NOMENCLATURE. |
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| 85 | RX MEDLINE=22364319; PubMed=12475498; DOI=10.1016/S1360-1385(02)02362-2; |
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| 86 | RA Yanagisawa S.; |
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| 87 | RT "The Dof family of plant transcription factors."; |
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| 88 | RL Trends Plant Sci. 7:555-560(2002). |
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| 89 | CC -!- FUNCTION: Transcription factor specifically involved in the |
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| 90 | CC maternal control of seed germination. Regulates transcription by |
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| 91 | CC binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the |
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| 92 | CC inactivity of a component that would be activated to trigger |
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| 93 | CC germination as a consequence of red light perception. |
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| 94 | CC -!- SUBCELLULAR LOCATION: Nucleus (Probable). |
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| 95 | CC -!- ALTERNATIVE PRODUCTS: |
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| 96 | CC Event=Alternative splicing; Named isoforms=2; |
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| 97 | CC Name=1; |
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| 98 | CC IsoId=Q43385-1; Sequence=Displayed; |
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| 99 | CC Name=2; |
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| 100 | CC IsoId=Q43385-2; Sequence=VSP_008898; |
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| 101 | CC Note=No experimental confirmation available; |
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| 102 | CC -!- TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, |
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| 103 | CC including in roots, stem, leaves and flowers, but not present in |
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| 104 | CC the seed and embryo. In maturing siliques, found all through the |
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| 105 | CC funiculus connecting the placenta to the ovule, but not in the |
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| 106 | CC ovule. |
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| 107 | CC -!- DEVELOPMENTAL STAGE: Turned off in siliques when they reached full |
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| 108 | CC maturation. Not expressed in developing or mature embryos. |
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| 109 | CC -!- MISCELLANEOUS: The regulatory role of DOF3.7/DAG1 appears to be |
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| 110 | CC opposite to that of DOF2.5/DAG2. Both zinc finger proteins may act |
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| 111 | CC on a maternal switch that controls seed germination, possibly by |
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| 112 | CC regulating the same gene(s). |
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| 113 | CC -!- SIMILARITY: Contains 1 Dof-type zinc finger. |
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| 114 | CC ----------------------------------------------------------------------- |
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| 115 | CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms |
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| 116 | CC Distributed under the Creative Commons Attribution-NoDerivs License |
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| 117 | CC ----------------------------------------------------------------------- |
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| 118 | DR EMBL; X97941; CAA66600.2; -; mRNA. |
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| 119 | DR EMBL; AJ224122; CAB40190.1; -; Genomic_DNA. |
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| 120 | DR EMBL; AL138642; CAB71892.1; -; Genomic_DNA. |
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| 121 | DR EMBL; AK117352; BAC42022.1; -; mRNA. |
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| 122 | DR PIR; T47977; T47977. |
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| 123 | DR RefSeq; NP_191744.1; -. |
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| 124 | DR UniGene; At.989; -. |
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| 125 | DR TRANSFAC; T02699; -. |
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| 126 | DR GeneID; 825358; -. |
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| 127 | DR GenomeReviews; BA000014_GR; AT3G61850. |
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| 128 | DR KEGG; ath:AT3G61850; -. |
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| 129 | DR GeneFarm; 4410; 446. |
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| 130 | DR TAIR; At3g61850; -. |
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| 131 | DR ArrayExpress; Q43385; -. |
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| 132 | DR GermOnline; AT3G61850; Arabidopsis thaliana. |
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| 133 | DR InterPro; IPR003851; Znf_Dof. |
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| 134 | DR Pfam; PF02701; zf-Dof; 1. |
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| 135 | DR PROSITE; PS01361; ZF_DOF_1; 1. |
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| 136 | DR PROSITE; PS50884; ZF_DOF_2; 1. |
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| 137 | PE 1: Evidence at protein level; |
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| 138 | KW Alternative splicing; Complete proteome; DNA-binding; Germination; |
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| 139 | KW Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc; |
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| 140 | KW Zinc-finger. |
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| 141 | FT CHAIN 1 296 Dof zinc finger protein DOF3.7. |
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| 142 | FT /FTId=PRO_0000074283. |
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| 143 | FT ZN_FING 74 128 Dof-type. |
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| 144 | FT COMPBIAS 173 176 Poly-His. |
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| 145 | FT VAR_SEQ 1 12 Missing (in isoform 2). |
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| 146 | FT /FTId=VSP_008898. |
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| 147 | SQ SEQUENCE 296 AA; 32966 MW; 0D733352776272EB CRC64; |
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| 148 | MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT |
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| 149 | ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG |
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| 150 | GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHALEL |
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| 151 | LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI |
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| 152 | NSNQRAQDNN DDMNGASRVL FPFSDMKELS STTQEKSHGN NTYWNGMFSN TGGSSW |
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| 153 | // |
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