Changes between Version 9 and Version 10 of BioPerlRoundTripSecondPass

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Timestamp:
2008/02/17 19:01:52 (11 years ago)
Author:
heikki
Comment:

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  • BioPerlRoundTripSecondPass

    v9 v10  
    7171   * Rewrote RX line parsing and writing 
    7272   * fixed: SVN revision 14505. 
    73  * MAJOR: GN line returning only values from key/value pairs (e.g. 
    74 {{{ 
    75 GN   Name=DOF3.7; Synonyms=BBFA, DAG1;...    
    76 ->   
    77 GN   DOF3.7 OR BBFA OR DAG1 ... 
    78 }}} 
    7973 * MAJOR: Extra spaces and a stop added to FT HELIX and STRAND lines: 
    8074{{{ 
     
    8377FT   STRAND      910    913       . 
    8478}}} 
    85  * minor: OC line word wrapping differences 
    86  * minor: extra spaces at the end of the first RT line when there are more than one of them 
    87  * minor: extra space after first FT line 
    88  * minor: FTid sometimes not written on its own line 
    89  * minor: extra space written to the end of the sequence line 
    90    * '''Note:''' All these extra spaces at the end of the line  come from _write_line_swissprot_regex(). Check if this can be fixed! 
    91    * I fixed spaces a the sequence lines 
    92    * SW max line length seems to be 76, not 80 
    93    * Sw does not word wrap between author surname and initials, nor at hyphen '-' 
     79   * fixed: SVN revision 14509. 
     80 * ~~MAJOR: word wrapping differences and extra spaces~~ 
     81   * minor: OC line word wrapping differences 
     82   * minor: extra spaces at the end of the first RT line when there are more than one of them 
     83   * minor: extra space after first FT line 
     84   * minor: extra space written to the end of the sequence line 
     85     * '''Note:''' All these extra spaces at the end of the line  come from _write_line_swissprot_regex(). Check if this can be fixed! 
     86     * SW max line length seems to be 76, not 80 
     87   * '''Note:''' Not all isues are solved, see below  
     88  * fixed: SVN revision 14509. 
     89 * ~~MAJOR: GN line returning only values from key/value pairs (e.g.~~ 
     90{{{ 
     91GN   Name=DOF3.7; Synonyms=BBFA, DAG1;...    
     92->   
     93GN   DOF3.7 OR BBFA OR DAG1 ... 
     94}}} 
     95   * fixed: SVN revision 14510. 
     96 * minor: FTid  not written on its own line 
     97 * minor: SW does not word wrap between author surname and initials, but does at hyphen '-' 
     98 * Molecular weight differs by a few daltons 
    9499