Changes between Version 1 and Version 2 of BioPerlRoundTripSecondPass

Timestamp:

2008/02/13 12:04:31 (16 years ago)

Author:

heikki

Comment:

--

BioPerlRoundTripSecondPass

@@ -22 +22 @@
    * '''Note:''' EMBL format does not have a separate name any more. The primary accession number is now the name on the ID line.
  * MAJOR: OX line for !TaxId is lost
- * minor: only the actual data on the DT (date) line is kept 
+ * minor: only the actual date on the DT (date) line is kept, release information and document version is lost.
+   * '''Note:''' We now track only the sequence version from the ID line, not the document version from the second DT line.
+   * '''Note:''' BioSQL can store both versions. Should we update the BioPerl Bio::Seq::RichSeqI API to have document version, too?
 {{{
 DT   27-FEB-1998 (Rel. 54, Created)
@@ -34 +36 @@
 RC   revised by [4]
 }}}
- * minor: Word wrapping differnences if free text lines, especially in author lists
+ * minor: Word wrapping differences if free text lines, especially in author lists
  * minor: the feature key/value pairs (FT) are not returned in order
- * minor: SQ line does not contain CRC32 value
+ * ~~minor: SQ line does not contain CRC32 value~~
+   * the current EMBL format does not use CRC32 any more!
    * note: there is a method for CRC64 in Bio::SeqIO::swiss::_crc64