Changes between Version 1 and Version 2 of BioPerlRoundTripSecondPass

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Timestamp:
2008/02/13 12:04:31 (11 years ago)
Author:
heikki
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  • BioPerlRoundTripSecondPass

    v1 v2  
    2222   * '''Note:''' EMBL format does not have a separate name any more. The primary accession number is now the name on the ID line. 
    2323 * MAJOR: OX line for !TaxId is lost 
    24  * minor: only the actual data on the DT (date) line is kept  
     24 * minor: only the actual date on the DT (date) line is kept, release information and document version is lost. 
     25   * '''Note:''' We now track only the sequence version from the ID line, not the document version from the second DT line. 
     26   * '''Note:''' BioSQL can store both versions. Should we update the BioPerl Bio::Seq::RichSeqI API to have document version, too? 
    2527{{{ 
    2628DT   27-FEB-1998 (Rel. 54, Created) 
     
    3436RC   revised by [4] 
    3537}}} 
    36  * minor: Word wrapping differnences if free text lines, especially in author lists 
     38 * minor: Word wrapping differences if free text lines, especially in author lists 
    3739 * minor: the feature key/value pairs (FT) are not returned in order 
    38  * minor: SQ line does not contain CRC32 value 
     40 * ~~minor: SQ line does not contain CRC32 value~~ 
     41   * the current EMBL format does not use CRC32 any more! 
    3942   * note: there is a method for CRC64 in Bio::SeqIO::swiss::_crc64 
    4043