Changes between Version 11 and Version 12 of OpenBio*

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Timestamp:
2008/02/12 11:41:14 (11 years ago)
Author:
markjschreiber
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  • OpenBio*

    v11 v12  
    77 
    88= Possible Tasks = 
    9  * Choose some 'reference' sequences to see how the Bio* projects 'round-trip' them. Where are the differences and why are there differences? 
    10  * Find out where each Bio* project persists it's data into BioSQL during ORM. Why are there differences? 
     9 * Choose some 'reference' sequences to see how the Bio* projects 'round-trip' them.  
     10   * Where are the differences and why are there differences? 
     11 * Find out where each Bio* project persists it's data into BioSQL during ORM.  
     12   * Why are there differences? 
    1113 * Establish guidelines for where things should go in BioSQL, eg given a Genbank file, what bits should go where. 
     14   * UML diagrams? 
    1215 * Define an interchange format for the Bio* projects. Probably XML, probably borrow something already existing (XEMBL etc). 
    1316 * Decide on a restricted vocab for annotations and feature types. Probably use SO. 
     17 * Define a middleware API for uniform I/O access to sequence database. 
     18   * Intially backed by BioSQL 
     19   * Could be backed by any DB 
     20 * Derby version of the BioSQL schema (Derby is the Java reference database).  
    1421 
    1522 
    1623 
    1724= Participants = 
    18  
     25 * Mark Schreiber 
     26 * Jan Aerts 
     27 * Richard Holland 
     28 * Hilmar Lapp 
     29 * Heikki Lehvaslaiho 
     30 * Richard  
    1931 
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