Changes between Version 2 and Version 3 of OpenBioSemantics

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Timestamp:
2008/02/12 11:45:35 (11 years ago)
Author:
r.bruskiewich
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  • OpenBioSemantics

    v2 v3  
    77= Proceedings = 
    88 
    9 = Summary of Day 1 Discussions (11th Feb. Afternoon AcademyHills) =  
     9= Summary of Day 1 Discussions (11th Feb. Afternoon !AcademyHills) =  
    1010 
    1111== Preliminary Observations == 
     
    1313Cathedral versus the Bazaar: the global community of bioinformatics are struggling with the issue of semantics, and various formalisms are currently being used to capture such semantics, i.e. 
    1414 
    15 * Object models: expressed in UML (e.g. OMG style "Model Driven Architecture" using Unified Modeling Language (UML)) 
    16 * Ontology initiatives 
    17 ** OBO format driven: e.g. Gene Ontology (GO), Sequence Ontology (SO), etc. 
    18 ** OWL format initiatives: OBI 
    19 * XML Schema driven languages: EMBRACE, BioCase/Tapir, etc. 
    20 * Common Database Schemata and Queries: BioSQL, Generic Model Organism (GMOD) Chado, [wiki:http://www.icis.cgiar.org International Crop Information System], etc. 
     15 * '''Object models:''' expressed in UML (e.g. OMG style "Model Driven Architecture" using Unified Modeling Language (UML)) 
     16 * '''Ontology initiatives:''' 
     17   * '''OBO format driven:''' e.g. Gene Ontology (GO), Sequence Ontology (SO), etc. 
     18   * '''OWL format initiatives:''' OBI 
     19 * '''XML Schema driven languages:''' EMBRACE WS-I, !BioCase, Tapir, etc. 
     20 * '''Common Database Schemata and Queries:''' BioSQL, [http://www.gmod.org Generic Model Organism (GMOD) Chado], [http://www.icis.cgiar.org International Crop Information System], etc.