| | 1 | = !BioPerl Outstanding Issues in roundtripping = |
| | 2 | |
| | 3 | At bioperl-live SVN revision 14544. |
| | 4 | |
| | 5 | All known issues below are classified as minor. |
| | 6 | |
| | 7 | == fasta == |
| | 8 | |
| | 9 | * possible minor issue: !BioPerl does not parse in sequence version nor fasta from genbank with a gi number. BioRuby does that. Should we? |
| | 10 | |
| | 11 | == genbank == |
| | 12 | |
| | 13 | * FT qualifier lines are not returned in order |
| | 14 | |
| | 15 | == embl == |
| | 16 | |
| | 17 | * minor: only the actual date on the DT (date) line is kept, release information and document version is lost. |
| | 18 | * '''Note:''' We now track only the sequence version from the ID line, not the document version from the second DT line. |
| | 19 | * '''Note:''' BioSQL can store both versions. Should we update the !BioPerl Bio::Seq::RichSeqI API to have document version, too? |
| | 20 | {{{ |
| | 21 | DT 27-FEB-1998 (Rel. 54, Created) |
| | 22 | DT 14-NOV-2006 (Rel. 89, Last updated, Version 6) |
| | 23 | -> |
| | 24 | DT 27-FEB-1998 |
| | 25 | DT 14-NOV-2006 |
| | 26 | }}} |
| | 27 | * minor: Word wrapping differences if free text lines, especially in author lists |
| | 28 | ** Line 'RL Submitted (date) to the EMBL/GenBank/DDBJ databases.' is shorter then 80, so the affiliation from the following line gets wrapped into this line. |
| | 29 | * minor: the feature key/value pairs (FT) are not returned in order |
| | 30 | |
