Changes between Version 16 and Version 17 of PDBj-DDBJ-KEGG

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Timestamp:
2008/02/13 10:00:51 (10 years ago)
Author:
akinjo
Comment:

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  • PDBj-DDBJ-KEGG

    v16 v17  
    3636Let's call this "funcanot" workflow. 
    3737 
    38 let hits = BLAST_DAD(fasta) 
     38let hits = BLAST_DAD(fasta): @DDBJ 
    3939if func_known(hits) then 
    40   send_to_KEGG( hits ) 
     40  send_to_KEGG( hits ) ;; annotation obtained from KEGG 
    4141else 
    42    let new_hits = BLAST_PDBj(fasta) 
     42   let new_hits = BLAST_PDBj(fasta): @DDBJ 
    4343     if exists(new_hits) then  
    4444       foreach hit in new_hits do 
    45           let shits = struct_navi(hit)  
     45          let shits = struct_navi(hit) :@PDBj 
    4646            if exists(shits) then  
    47               send_to_KEGG( shits ) 
     47              send_to_KEGG( shits );; annotation obtained from KEGG 
    4848       done 
    4949 
     
    6262finally got to real work.... (14:00; 2008-02-12) 
    6363Prototyping using Taverna. 
    64  * Taverna can be used with REST-based WS? 
     64 * Taverna can be used with REST-based WS? -> YES! 
    6565 
    6666 
     67