Changes between Version 17 and Version 18 of PDBj-DDBJ-KEGG

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Timestamp:
2008/02/13 10:03:56 (11 years ago)
Author:
akinjo
Comment:

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  • PDBj-DDBJ-KEGG

    v17 v18  
    3636Let's call this "funcanot" workflow. 
    3737 
    38 let hits = BLAST_DAD(fasta): @DDBJ 
    39 if func_known(hits) then 
    40   send_to_KEGG( hits ) ;; annotation obtained from KEGG 
    41 else 
    42    let new_hits = BLAST_PDBj(fasta): @DDBJ 
    43      if exists(new_hits) then  
    44        foreach hit in new_hits do 
    45           let shits = struct_navi(hit) :@PDBj 
    46             if exists(shits) then  
    47               send_to_KEGG( shits );; annotation obtained from KEGG 
    48        done 
     38let hits = BLAST_DAD(fasta) @DDBJ 
     39  if func_known(hits) then 
     40    send_to_KEGG( hits ) ;; annotation obtained from KEGG 
     41  else 
     42    let new_hits = BLAST_PDBj(fasta): @DDBJ 
     43       if exists(new_hits) then  
     44         foreach hit in new_hits do 
     45            let shits = struct_navi(hit) :@PDBj 
     46              if exists(shits) then  
     47                send_to_KEGG( shits );; annotation obtained from KEGG 
     48 
    4949 
    5050||input|| amino acid sequence with unknown function||