Changes between Version 14 and Version 15 of PhyloWS_workgroup

Show
Ignore:
Timestamp:
2008/02/12 12:29:08 (10 years ago)
Author:
czmasek
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • PhyloWS_workgroup

    v14 v15  
    1515The Open Space discussion centered on the following issues: 
    1616 * The OTU (Operational Taxonomic Unit) perspective is an important use-case.  
    17   * Gene tree analysis: splitting a given set of trees into subsets of trees as a function of compatibility to a given (set of) species tree(s).  
     17  * Gene tree analysis: splitting a given set of trees into subsets of trees as a function of compatibility to a given (set of) species tree(s). Degree of compatibility can be expressed as minimal sum of duplications needed to  
    1818  * Gene tree analysis: similar to the Zmasek et al (2007) paper, one may want to build alignments and phylogenetic trees for all ortholog families of a  gene family, or a pathway. After loading the trees into a database, one could then query the database for those gene trees that support a certain species phylogeny, for example the Ecdysozoan hypothesis. 
    1919   * Problem: the query topology will be given with either gene name labels, or species name labels, but the labels of the trees will be OTUs.