Changes between Version 5 and Version 6 of Text Mining

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Timestamp:
2009/01/19 01:51:54 (10 years ago)
Author:
kano
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  • Text Mining

    v5 v6  
    1717 
    1818== NLP Web services for Bioinformatics == 
     19 
     20Interoperability Frameworks related to NLP/TM 
     21 * UIMA (Unstructured Information Management Architecture) 
     22  * [http://incubator.apache.org/uima/ Apache UIMA] (open source reference implementation) 
     23  * [http://www.oasis-open.org/committees/uima/ OASIS UIMA committee] (open specification) 
     24 * [http://gate.ac.uk/ GATE], an NLP platform by Shefield University 
     25 
     26Common Issues 
    1927 * How to relate with UIMA  
    2028 * How to set the granularity of services 
    21   * Provide each NLP module as web service 
    22    * Typical module pipeline at NLP: 
     29 * Provide each/some of NLP modules as web service 
     30 * Typical module pipeline at NLP, e.g.: 
    2331{{{ 
    24      [Document] -> [Sentence Detection] -> [Tokenize] -> [POS Tagging] -> [Protein name detection] -> [Protei-protein interaction detection] 
     32     [Document] -> [Sentence Detection] -> [Tokenize] -> [POS Tagging] ->  
     33[Protein name detection] -> [Protei-protein interaction detection] 
    2534}}} 
    26    * Provide integrated service  
     35 * Provide integrated service  
    2736 
    28    Some integrated services are available as well as each NLP module. 
     37Examples of Available Integrated Services and/or NLP Modules 
    2938 
    30    [http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/home/wiki.cgi GENIA project] 
     39 * [http://u-compare.org/ U-Compare initiative] 
     40   * UIMA compliant, web distributed integrated system 
     41   * a large collection of interoperable web/local services 
     42   * a joint project between the University of Tokyo, UK National Centre for Text Mining (NaCTeM), the University of Colorado Health Science Center. 
     43     
     44 * [http://www.nactem.ac.uk/services.php NaCTeM services] 
    3145 
    32    [http://www.nactem.ac.uk/services.php NaCTeM services] 
    33  
    34 Related existing TM WS is [http://www.ihop-net.org/ iHOP], which is in the BioMOBY directory. 
     46 * Related existing TM WS is [http://www.ihop-net.org/ iHOP], which is in the BioMOBY directory.