| 1 | ID DOF37_ARATH Reviewed; 296 AA.
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| 2 | AC Q43385; Q8GYW3; Q9SAF9;
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| 3 | DT 19-OCT-2002, integrated into UniProtKB/Swiss-Prot.
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| 4 | DT 01-JUN-2001, sequence version 2.
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| 5 | DT 04-DEC-2007, entry version 60.
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| 6 | DE Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination
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| 7 | DE 1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a).
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| 8 | GN Name=DOF3.7; Synonyms=BBFA, DAG1; OrderedLocusNames=At3g61850;
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| 9 | GN ORFNames=F21F14.20;
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| 10 | OS Arabidopsis thaliana (Mouse-ear cress) (Arabidopsis thaliana (L.) Heynh.).
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| 11 | OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| 12 | OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
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| 13 | OC eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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| 14 | OX NCBI_TaxID=3702;
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| 15 | RN [1]
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| 16 | RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1).
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| 17 | RC STRAIN=cv. Columbia, and cv. Wassilewskija;
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| 18 | RX MEDLINE=96367665;
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| 19 | RA de Paolis A., Sabatini S., de Pascalis L., Costantino P., Capone I.;
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| 20 | RT "A rolB regulatory factor belongs to a new class of single zinc finger
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| 21 | RT plant proteins.";
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| 22 | RL Plant J. 10:215-223(1996).
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| 23 | RN [2]
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| 24 | RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
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| 25 | RC STRAIN=cv. Wassilewskija;
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| 26 | RX MEDLINE=20107030;
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| 27 | RA Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P., Vittorioso
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| 28 | RA P.;
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| 29 | RT "Identification and disruption of an Arabidopsis zinc finger gene
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| 30 | RT controlling seed germination.";
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| 31 | RL Genes Dev. 14:28-33(2000).
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| 32 | RN [3]
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| 33 | RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
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| 34 | RC STRAIN=cv. Columbia;
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| 35 | RX MEDLINE=21016720;
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| 36 | RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
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| 37 | RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry
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| 38 | RA M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
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| 39 | RA Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
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| 40 | RA Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel
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| 41 | RA C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
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| 42 | RA Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
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| 43 | RA Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati
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| 44 | RA B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
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| 45 | RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
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| 46 | RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke
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| 47 | RA R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse
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| 48 | RA A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A.,
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| 49 | RA Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd
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| 50 | RA S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L.,
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| 51 | RA Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii
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| 52 | RA C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van
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| 53 | RA Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
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| 54 | RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
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| 55 | RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto
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| 56 | RA S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara
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| 57 | RA M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo
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| 58 | RA S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
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| 59 | RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
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| 60 | RL Nature 408:820-822(2000).
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| 61 | RN [4]
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| 62 | RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
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| 63 | RC STRAIN=cv. Columbia;
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| 64 | RX MEDLINE=21932900;
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| 65 | RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., Nakajima
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| 66 | RA M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y., Kawai J.,
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| 67 | RA Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K., Shinagawa A.,
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| 68 | RA Shinozaki K.;
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| 69 | RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
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| 70 | RL Science 296:141-145(2002).
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| 71 | RN [5]
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| 72 | RP CHARACTERIZATION.
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| 73 | RX MEDLINE=21831160;
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| 74 | RA Papi M., Sabatini S., Altamura M.M., Hennig L., Schaefer E., Costantino P.,
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| 75 | RA Vittorioso P.;
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| 76 | RT "Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects
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| 77 | RT response to light and integrity of the testa of Arabidopsis seeds.";
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| 78 | RL Plant Physiol. 128:411-417(2002).
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| 79 | RN [6]
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| 80 | RP GENE FAMILY, AND NOMENCLATURE.
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| 81 | RX MEDLINE=22364319;
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| 82 | RA Yanagisawa S.;
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| 83 | RT "The Dof family of plant transcription factors.";
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| 84 | RL Trends Plant Sci. 7:555-560(2002).
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| 85 | CC -!- FUNCTION: Transcription factor specifically involved in the
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| 86 | CC maternal control of seed germination. Regulates transcription by
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| 87 | CC binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the
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| 88 | CC inactivity of a component that would be activated to trigger
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| 89 | CC germination as a consequence of red light perception.
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| 90 | CC -!- SUBCELLULAR LOCATION: Nucleus (Probable).
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| 91 | CC -!- ALTERNATIVE PRODUCTS:
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| 92 | CC Event=Alternative splicing; Named isoforms=2;
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| 93 | CC Name=1;
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| 94 | CC IsoId=Q43385-1; Sequence=Displayed;
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| 95 | CC Name=2;
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| 96 | CC IsoId=Q43385-2; Sequence=VSP_008898;
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| 97 | CC Note=No experimental confirmation available;
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| 98 | CC -!- TISSUE SPECIFICITY: Expressed in the phloem of the mother plant,
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| 99 | CC including in roots, stem, leaves and flowers, but not present in
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| 100 | CC the seed and embryo. In maturing siliques, found all through the
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| 101 | CC funiculus connecting the placenta to the ovule, but not in the
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| 102 | CC ovule.
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| 103 | CC -!- DEVELOPMENTAL STAGE: Turned off in siliques when they reached full
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| 104 | CC maturation. Not expressed in developing or mature embryos.
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| 105 | CC -!- MISCELLANEOUS: The regulatory role of DOF3.7/DAG1 appears to be
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| 106 | CC opposite to that of DOF2.5/DAG2. Both zinc finger proteins may act
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| 107 | CC on a maternal switch that controls seed germination, possibly by
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| 108 | CC regulating the same gene(s).
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| 109 | CC -!- SIMILARITY: Contains 1 Dof-type zinc finger.
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| 110 | CC -----------------------------------------------------------------------
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| 111 | CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
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| 112 | CC Distributed under the Creative Commons Attribution-NoDerivs License
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| 113 | CC -----------------------------------------------------------------------
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| 114 | DR EMBL; X97941; CAA66600.2; -; mRNA.
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| 115 | DR EMBL; AJ224122; CAB40190.1; -; Genomic_DNA.
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| 116 | DR EMBL; AL138642; CAB71892.1; -; Genomic_DNA.
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| 117 | DR EMBL; AK117352; BAC42022.1; -; mRNA.
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| 118 | DR PIR; T47977; T47977.
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| 119 | DR RefSeq; NP_191744.1; -.
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| 120 | DR UniGene; At.989; -.
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| 121 | DR TRANSFAC; T02699; -.
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| 122 | DR GeneID; 825358; -.
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| 123 | DR GenomeReviews; BA000014_GR; AT3G61850.
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| 124 | DR KEGG; ath:AT3G61850; -.
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| 125 | DR GeneFarm; 4410; 446.
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| 126 | DR TAIR; At3g61850; -.
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| 127 | DR ArrayExpress; Q43385; -.
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| 128 | DR GermOnline; AT3G61850; Arabidopsis thaliana.
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| 129 | DR InterPro; IPR003851; Znf_Dof.
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| 130 | DR Pfam; PF02701; zf-Dof; 1.
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| 131 | DR PROSITE; PS01361; ZF_DOF_1; 1.
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| 132 | DR PROSITE; PS50884; ZF_DOF_2; 1.
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| 133 | PE 1: Evidence at protein level;
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| 134 | KW Alternative splicing; Complete proteome; DNA-binding; Germination;
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| 135 | KW Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc;
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| 136 | KW Zinc-finger.
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| 137 | FT CHAIN 1 296 Dof zinc finger protein DOF3.7.
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| 138 | FT /FTId=PRO_0000074283.
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| 139 | FT ZN_FING 74 128 Dof-type.
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| 140 | FT COMPBIAS 173 176 Poly-His.
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| 141 | FT VAR_SEQ 1 12 Missing (in isoform 2).
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| 142 | FT /FTId=VSP_008898.
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| 143 | SQ SEQUENCE 296 AA; 32966 MW; 0D733352776272EB CRC64;
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| 144 | MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT
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| 145 | ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG
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| 146 | GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHALEL
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| 147 | LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI
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| 148 | NSNQRAQDNN DDMNGASRVL FPFSDMKELS STTQEKSHGN NTYWNGMFSN TGGSSW
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| 149 | // |
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