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OpenBio*: aj224122-bioperl.embl

File aj224122-bioperl.embl, 8.9 KB (added by heikki, 17 years ago)
bioperl processed EMBL file

Line
1	ID AJ224122; SV 3; linear; genomic DNA; STD; PLN; 3827 BP.
2	XX
3	AC AJ224122;
4	XX
5	DT 27-FEB-1998
6	DT 14-NOV-2006
7	XX
8	DE Arabidopsis thaliana DAG1 gene
9	XX
10	KW BBFa gene; transcription factor.
11	XX
12	OS Arabidopsis thaliana (thale cress)
13	OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
14	OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
15	OC eurosids II; Brassicales; Brassicaceae; Arabidopsis.
16	XX
17	RN [1]
18	RA Vittorioso P.;
19	RT ;
20	RL Submitted (24-FEB-1998) to the EMBL/GenBank/DDBJ databases. Vittorioso P.,
21	RL Dip. Genetica e Biologia Molecolare, Universita di Roma La Sapienza, P.le
22	RL Aldo Moro, 5; , 00185 Rome, ITALY.
23	RC revised by [3]
24	XX
25	RN [2]
26	RX PUBMED; 8771779.
27	RA De Paolis A., Sabatini S., De Pascalis L., Costantino P., Capone I.;
28	RT "A rolB regulatory factor belongs to a new class of single zinc finger
29	RT plant proteins";
30	RL Plant J. 10(2):215-223(1996).
31	XX
32	RN [3]
33	RA Vittorioso P.;
34	RT ;
35	RL Submitted (25-FEB-1999) to the EMBL/GenBank/DDBJ databases. Vittorioso P.,
36	RL Dip. Genetica e Biologia Molecolare, Universita di Roma La Sapienza, P.le
37	RL Aldo Moro, 5; , 00185 Rome, ITALY.
38	RC revised by [4]
39	XX
40	RN [4]
41	RP 1-3827
42	RA Vittorioso P.;
43	RT ;
44	RL Submitted (12-APR-2001) to the EMBL/GenBank/DDBJ databases. Vittorioso P.,
45	RL Dip. Genetica e Biologia Molecolare, Universita di Roma La Sapienza, P.le
46	RL Aldo Moro, 5; , 00185 Rome, ITALY.
47	XX
48	RN [5]
49	RX PUBMED; 10640273.
50	RA Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P.,
51	RA Vittorioso P.;
52	RT "Identification and disruption of an Arabidopsis zinc finger gene
53	RT controlling seed germination";
54	RL Genes Dev. 14(1):28-33(2000).
55	XX
56	FH Key Location/Qualifiers
57	FH
58	FT source 1..3827
59	FT /mol_type="genomic DNA"
60	FT /db_xref="taxon:3702"
61	FT /cultivar="Wassilewskija"
62	FT /chromosome="3"
63	FT /organism="Arabidopsis thaliana"
64	FT mRNA join(1726..1863,2548..3052,3137..3827)
65	FT /experiment="experimental evidence, no additional details
66	FT recorded"
67	FT /function="transcription factor"
68	FT /gene="DAG1"
69	FT /product="DNA-binding protein"
70	FT CDS join(1840..1863,2548..3052,3137..3498)
71	FT /experiment="experimental evidence, no additional details
72	FT recorded"
73	FT /function="transcription factor"
74	FT /protein_id="CAB40190.1"
75	FT /gene="DAG1"
76	FT /standard_name="BBFa"
77	FT /db_xref="GOA:Q43385"
78	FT /db_xref="InterPro:IPR003851"
79	FT /db_xref="UniProtKB/Swiss-Prot:Q43385"
80	FT /product="DNA-binding protein"
81	FT /translation="MDATKWTQGFQEMINVKPMEQMISSTNNNTPQQQPTFIATNTRPN
82	FT ATASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGC
83	FT RRYWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSSQIPNKSNKDLN
84	FT LLSFPVMQDHHHHALELLRSNGVSSRGMNTFLPGQMMDSNSVLYSSLGFPTMPDYKQSN
85	FT NNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSSTTQEKSHGNN
86	FT TYWNGMFSNTGGSSW"
87	FT exon 1726..1863
88	FT /number=1
89	FT /gene="DAG1"
90	FT intron 1864..2547
91	FT /number=1
92	FT /gene="DAG1"
93	FT exon 2548..3052
94	FT /number=2
95	FT /gene="DAG1"
96	FT intron 3053..3136
97	FT /number=2
98	FT /gene="DAG1"
99	FT exon 3137..3495
100	FT /number=3
101	FT /gene="DAG1"
102	XX
103	SQ Sequence 3827 BP; 1216 A; 693 C; 590 G; 1328 T; 0 other;
104	aattaaaacg ccacgcaagg cgattctagg aaatcaaaac gacacgaaat gtggggtggg 60
105	tgtttgggta ggaaagacag ttgtcaacat cagggatttg gattgaatca aaaaaaaagt 120
106	ccttagattt cataaaagct aatcacgcct caaaactggg gcctatctct tcttttttgt 180
107	cgcttcctgt cggtccttct ctatttcttc tccaacccct catttttgaa tatttacata 240
108	acaaaccgtt ttactttctt tggtcaaaat tagacccaaa attctatatt agtttaagat 300
109	atgtggtctg taatttattg ttgtattgat ataaaaatta gttataagcg attatatttt 360
110	tatgctcaag taactggtgt tagttaacta tattccacca cgataacctg attacataaa 420
111	atatgatttt aatcatttta gtaaaccata tcgcacgttg gatgattaat tttaacggtt 480
112	taataacacg tgattaaatt atttttagaa tgattattta caaacggaaa agctatatgt 540
113	gacacaataa ctcgtgcagt attgttagtt tgaaaagtgt atttggtttc ttatatttgg 600
114	cctcgatttt cagtttatgt gctttttaca aagttttatt ttcgttatct gtttaacgcg 660
115	acatttgttg tatggcttta ccgatttgag aataaaatca tattaccttt atgtagccat 720
116	gtgtggtgta atatataata atggtccttc tacgaaaaaa gcagatcaca attgaaataa 780
117	agggtgaaat ttggtgtccc ttttcttcgt cgaaataaca gaactaaata aaagaaagtg 840
118	ttatagtata ttacgtccga agaataatcc atattcctga aatacagtca acatattata 900
119	tatttagtac tttatataaa gttaggaatt aaatcatatg ttttatcgac catattaagt 960
120	cacaacttta tcataaatta atctgtaatt agaattccaa gttcgccacc gaatttcgta 1020
121	acctaatcta catataatag ataaaatata tatatgtaga gtaattatga tatctatgta 1080
122	tgtagtcatg gtatatgaat tttgaaattg gcaaggtaac attgacggat cgtaacccaa 1140
123	caaataatat taattacaaa atgggtgggc gggaatagta tacaactcat aattccactc 1200
124	actttttgta ttattaggat atgaaataag agtaatcaac atgcataata aagatgtata 1260
125	atttcttcat cttaaaaaac ataactacat ggtttaatac acaattttac cttttatcaa 1320
126	aaaagtattt cacaattcac tcgcaaatta cgaaatgatg gctagtgctt caactccaaa 1380
127	tttcgaatat tttaaatcac gatgtgtaga accttttatt tactggatac taatcactag 1440
128	tttattgagc caaccaatta gttaaataga acaatcaata ttatagccag atattttttc 1500
129	ctttaaaaat atttaaaaga ggggccagaa aagaaccaga gagggaggcc atgagacatt 1560
130	attatcacta gtcaaaaaca acaaaccctc cttttgcttt ttcatataaa ttattatatt 1620
131	ttattttgca ggtttcttct cttcttcttc ttcttcttct tcttcttcct cttggctgct 1680
132	ttctttcatc atccataaag tgaaagctaa cgcatagaga gagccatatc gtcccaaaaa 1740
133	aagcaaaagt ccaaaaaaaa acaactccaa aacattctct cttagctctt tactctttag 1800
134	tttctctctc tctctctgcc tttctctttg ttgaagttca tggatgctac gaagtggact 1860
135	caggtacgta aaaagatatc tctctgctat atctgtttgt ttgtagcttc tccccgactc 1920
136	tcacgctctc tctctctctc tctctctctt tgtgtatctc tctactcaca taaatatata 1980
137	catgtgtgtg tatgcatgtt tatatgtatg tatgaaacca gtagtggtta tacagatagt 2040
138	ctatatagag atatcaatat gatgtgtttt aatttagact ttttatatat ccgtttgaaa 2100
139	cttccgaagt tctcgaatgg agttaaggaa gttttgttct ctacaagttc aatttttctt 2160
140	gtcattaatt ataaaactct gataactaat ggataaaaaa ggtatgcttt gttagttacc 2220
141	ttttgttctt ggtgctcagg tcttaccatt tttttcctaa attttaatta gtctcctttc 2280
142	tttaattaat tttatgttaa cgcactgacg atttaacgtt aacaaaaaaa cctagattct 2340
143	ttttcttttc aatagagcat aattattact tcaatttcat ttatctcaca ctaaacccta 2400
144	atcttggcga aattcctttt atatatataa atttaattaa tttttccaca atcttggcgg 2460
145	aattcaggac tcggttttgc ttgttattgt tctctctttt aatttgacat ggttagggaa 2520
146	tacttaaagt atgtcttaat tttatagggt tttcaagaaa tgataaacgt aaagccaatg 2580
147	gagcaaatga tttctagcac caacaacaac acaccgcaac aacaaccaac attcatcgcc 2640
148	accaacacaa ggccaaacgc caccgcatcc aatggtggct ccggaggaaa taccaacaac 2700
149	acggctacga tggaaactag aaaggcgagg ccacaagaga aagtaaattg tccaagatgc 2760
150	aactcaacaa acacaaagtt ctgttattac aacaactaca gtctcacgca accaagatac 2820
151	ttctgcaaag gttgtcgaag gtattggacc gaaggtggct ctcttcgtaa cgtcccagtc 2880
152	ggaggtagct caagaaagaa caagagatcc tctacacctt tagcttcacc ttctaatccc 2940
153	aaacttccag atctaaaccc accgattctt ttctcaagcc aaatccctaa taagtcaaat 3000
154	aaagatctca acttgctatc tttcccggtc atgcaagatc atcatcatca tggtatgtct 3060
155	catttttttc atatgcccaa gatagagaac aacaatactt catcctcaat ctatgcttca 3120
156	tcatctcctg tctcagctct tgagcttcta agatccaatg gagtctcttc aagaggcatg 3180
157	aacacgttct tgcctggtca aatgatggat tcaaactcag tcctgtactc atctttaggg 3240
158	tttccaacaa tgcctgatta caaacagagt aataacaacc tttcattctc cattgatcat 3300
159	catcaaggga ttggacataa caccatcaac agtaaccaaa gagctcaaga taacaatgat 3360
160	gacatgaatg gagcaagtag ggttttgttc cctttttcag acatgaaaga gctttcaagc 3420
161	acaacccaag agaagagtca tggtaataat acatattgga atgggatgtt cagtaataca 3480
162	ggaggatctt catggtgaaa aaaggttaaa aagagctcat gaactatcag ctttcttctc 3540
163	tttttctgtt tttttctcct attttattat agtttttact ttgatgatct tttgtttttt 3600
164	ctcacatggg gaactttact taaagttgtc agaacttagt ttacagattg tctttttatt 3660
165	ccttctttct ggttttcctt ttttcctttt tttatcagtc tttttaaaat atgtatttca 3720
166	taattgggtt tgatcattca tatttattag tatcaaaata gagtctatgt tcatgaggga 3780
167	gtgttaaggg gtgtgagggt agaagaataa gtgaatacgg gggcccg 3827
168	//

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