Changes between Version 11 and Version 12 of OpenBio*
- Timestamp:
- 2008/02/12 11:41:14 (17 years ago)
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OpenBio*
v11 v12 7 7 8 8 = Possible Tasks = 9 * Choose some 'reference' sequences to see how the Bio* projects 'round-trip' them. Where are the differences and why are there differences? 10 * Find out where each Bio* project persists it's data into BioSQL during ORM. Why are there differences? 9 * Choose some 'reference' sequences to see how the Bio* projects 'round-trip' them. 10 * Where are the differences and why are there differences? 11 * Find out where each Bio* project persists it's data into BioSQL during ORM. 12 * Why are there differences? 11 13 * Establish guidelines for where things should go in BioSQL, eg given a Genbank file, what bits should go where. 14 * UML diagrams? 12 15 * Define an interchange format for the Bio* projects. Probably XML, probably borrow something already existing (XEMBL etc). 13 16 * Decide on a restricted vocab for annotations and feature types. Probably use SO. 17 * Define a middleware API for uniform I/O access to sequence database. 18 * Intially backed by BioSQL 19 * Could be backed by any DB 20 * Derby version of the BioSQL schema (Derby is the Java reference database). 14 21 15 22 16 23 17 24 = Participants = 18 25 * Mark Schreiber 26 * Jan Aerts 27 * Richard Holland 28 * Hilmar Lapp 29 * Heikki Lehvaslaiho 30 * Richard 19 31 20 32
