Changes between Version 34 and Version 35 of OpenBio*

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Timestamp:
2008/02/14 16:24:19 (17 years ago)
Author:
markjschreiber
Comment:

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  • OpenBio*

    v34 v35  
    8686 * -- Would like to work out how best to represent EMBL CO (EMBLxml 'contig') lines in BioSQL. These are extra hard as they are in place of actual sequence data - sequences that have CO lines have NO SQ lines - meaning that sequence length has to be computed as a function of the CO lines rather than being provided. CO lines look like GenBank locations but have a simpler syntax plus one extra keyword for gaps, which is either numeric or a string 'unk100' indicating unknown gap size. 
    8787 * Generation of EJB entity beans for BioSQL schema. 
     88   * EJB's must be manually generated for BIOENTRY_PATH, BIOENTRY_QUALIFIER_VALUE, SEQFEATURE_PATH and TAXON_NAME 
    8889 * Discussion about consistent use of Unique Keys rather than Primary Keys for compound but mutable instances. 
    8990