Changes between Version 37 and Version 38 of OpenBio*

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Timestamp:
2008/02/14 18:46:21 (17 years ago)
Author:
markjschreiber
Comment:

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  • OpenBio*

    v37 v38  
    8686 * -- Would like to work out how best to represent EMBL CO (EMBLxml 'contig') lines in BioSQL. These are extra hard as they are in place of actual sequence data - sequences that have CO lines have NO SQ lines - meaning that sequence length has to be computed as a function of the CO lines rather than being provided. CO lines look like GenBank locations but have a simpler syntax plus one extra keyword for gaps, which is either numeric or a string 'unk100' indicating unknown gap size. 
    8787 * Generation of EJB entity beans for BioSQL schema. 
    88    * EJB's must be manually generated for BIOENTRY_PATH (done), BIOENTRY_QUALIFIER_VALUE (done), SEQFEATURE_PATH and TAXON_NAME 
     88   * EJB's must be manually generated for BIOENTRY_PATH (done), BIOENTRY_QUALIFIER_VALUE (done), SEQFEATURE_PATH (done) and TAXON_NAME 
    8989 * Discussion about consistent use of Unique Keys rather than Primary Keys for compound but mutable instances. 
    9090