Description of services

• DDBJ
• PDBj
• KEGG
• CBRC

DDBJ

 http://www.xml.nig.ac.jp/index.html

• data retrieve
• sequence search and analysis
• derived DBs
• other DBs

PDBj

KEGG

 http://www.genome.jp/kegg/soap/doc/keggapi_manual.html

first concentrate on sequence + alignment

functional annotations

a given structure with unknown function -> BLAST at DDBJ / KEGG -> no homologs then -> struct-navi

• accession number -> fasta

• PDB ID <-> KEGG GENES ID get_linkdb_between_databases(string:from_db, string:to_db, int:offset, int:limit)

• PDB ID <-> DDDBJ ID