OpenBio*: aj224122.swiss

File aj224122.swiss, 7.8 KB (added by heikki, 11 years ago)

AJ224122 translation (DOF37_ARATH/Q43385) in swiss-prot format as downloaded from UniProt?

Line 
1ID   DOF37_ARATH             Reviewed;         296 AA.
2AC   Q43385; Q8GYW3; Q9SAF9;
3DT   19-OCT-2002, integrated into UniProtKB/Swiss-Prot.
4DT   01-JUN-2001, sequence version 2.
5DT   04-DEC-2007, entry version 60.
6DE   Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination
7DE   1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a).
8GN   Name=DOF3.7; Synonyms=BBFA, DAG1; OrderedLocusNames=At3g61850;
9GN   ORFNames=F21F14.20;
10OS   Arabidopsis thaliana (Mouse-ear cress).
11OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
12OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
13OC   rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
14OX   NCBI_TaxID=3702;
15RN   [1]
16RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1).
17RC   STRAIN=cv. Columbia, and cv. Wassilewskija;
18RX   MEDLINE=96367665; PubMed=8771779;
19RA   de Paolis A., Sabatini S., de Pascalis L., Costantino P., Capone I.;
20RT   "A rolB regulatory factor belongs to a new class of single zinc finger
21RT   plant proteins.";
22RL   Plant J. 10:215-223(1996).
23RN   [2]
24RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
25RC   STRAIN=cv. Wassilewskija;
26RX   MEDLINE=20107030; PubMed=10640273;
27RA   Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P.,
28RA   Vittorioso P.;
29RT   "Identification and disruption of an Arabidopsis zinc finger gene
30RT   controlling seed germination.";
31RL   Genes Dev. 14:28-33(2000).
32RN   [3]
33RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
34RC   STRAIN=cv. Columbia;
35RX   MEDLINE=21016720; PubMed=11130713; DOI=10.1038/35048706;
36RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
37RA   Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
38RA   Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
39RA   De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
40RA   Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
41RA   Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
42RA   Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
43RA   Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
44RA   Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
45RA   Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
46RA   Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
47RA   Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
48RA   Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
49RA   de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
50RA   Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
51RA   Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
52RA   Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
53RA   Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
54RA   Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
55RA   Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
56RA   Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
57RA   Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
58RA   Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
59RA   Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
60RA   Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
61RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
62RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis
63RT   thaliana.";
64RL   Nature 408:820-822(2000).
65RN   [4]
66RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
67RC   STRAIN=cv. Columbia;
68RX   MEDLINE=21932900; PubMed=11910074; DOI=10.1126/science.1071006;
69RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
70RA   Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
71RA   Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
72RA   Shibata K., Shinagawa A., Shinozaki K.;
73RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
74RL   Science 296:141-145(2002).
75RN   [5]
76RP   CHARACTERIZATION.
77RX   MEDLINE=21831160; PubMed=11842145; DOI=10.1104/pp.010488;
78RA   Papi M., Sabatini S., Altamura M.M., Hennig L., Schaefer E.,
79RA   Costantino P., Vittorioso P.;
80RT   "Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects
81RT   response to light and integrity of the testa of Arabidopsis seeds.";
82RL   Plant Physiol. 128:411-417(2002).
83RN   [6]
84RP   GENE FAMILY, AND NOMENCLATURE.
85RX   MEDLINE=22364319; PubMed=12475498; DOI=10.1016/S1360-1385(02)02362-2;
86RA   Yanagisawa S.;
87RT   "The Dof family of plant transcription factors.";
88RL   Trends Plant Sci. 7:555-560(2002).
89CC   -!- FUNCTION: Transcription factor specifically involved in the
90CC       maternal control of seed germination. Regulates transcription by
91CC       binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the
92CC       inactivity of a component that would be activated to trigger
93CC       germination as a consequence of red light perception.
94CC   -!- SUBCELLULAR LOCATION: Nucleus (Probable).
95CC   -!- ALTERNATIVE PRODUCTS:
96CC       Event=Alternative splicing; Named isoforms=2;
97CC       Name=1;
98CC         IsoId=Q43385-1; Sequence=Displayed;
99CC       Name=2;
100CC         IsoId=Q43385-2; Sequence=VSP_008898;
101CC         Note=No experimental confirmation available;
102CC   -!- TISSUE SPECIFICITY: Expressed in the phloem of the mother plant,
103CC       including in roots, stem, leaves and flowers, but not present in
104CC       the seed and embryo. In maturing siliques, found all through the
105CC       funiculus connecting the placenta to the ovule, but not in the
106CC       ovule.
107CC   -!- DEVELOPMENTAL STAGE: Turned off in siliques when they reached full
108CC       maturation. Not expressed in developing or mature embryos.
109CC   -!- MISCELLANEOUS: The regulatory role of DOF3.7/DAG1 appears to be
110CC       opposite to that of DOF2.5/DAG2. Both zinc finger proteins may act
111CC       on a maternal switch that controls seed germination, possibly by
112CC       regulating the same gene(s).
113CC   -!- SIMILARITY: Contains 1 Dof-type zinc finger.
114CC   -----------------------------------------------------------------------
115CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
116CC   Distributed under the Creative Commons Attribution-NoDerivs License
117CC   -----------------------------------------------------------------------
118DR   EMBL; X97941; CAA66600.2; -; mRNA.
119DR   EMBL; AJ224122; CAB40190.1; -; Genomic_DNA.
120DR   EMBL; AL138642; CAB71892.1; -; Genomic_DNA.
121DR   EMBL; AK117352; BAC42022.1; -; mRNA.
122DR   PIR; T47977; T47977.
123DR   RefSeq; NP_191744.1; -.
124DR   UniGene; At.989; -.
125DR   TRANSFAC; T02699; -.
126DR   GeneID; 825358; -.
127DR   GenomeReviews; BA000014_GR; AT3G61850.
128DR   KEGG; ath:AT3G61850; -.
129DR   GeneFarm; 4410; 446.
130DR   TAIR; At3g61850; -.
131DR   ArrayExpress; Q43385; -.
132DR   GermOnline; AT3G61850; Arabidopsis thaliana.
133DR   InterPro; IPR003851; Znf_Dof.
134DR   Pfam; PF02701; zf-Dof; 1.
135DR   PROSITE; PS01361; ZF_DOF_1; 1.
136DR   PROSITE; PS50884; ZF_DOF_2; 1.
137PE   1: Evidence at protein level;
138KW   Alternative splicing; Complete proteome; DNA-binding; Germination;
139KW   Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc;
140KW   Zinc-finger.
141FT   CHAIN         1    296       Dof zinc finger protein DOF3.7.
142FT                                /FTId=PRO_0000074283.
143FT   ZN_FING      74    128       Dof-type.
144FT   COMPBIAS    173    176       Poly-His.
145FT   VAR_SEQ       1     12       Missing (in isoform 2).
146FT                                /FTId=VSP_008898.
147SQ   SEQUENCE   296 AA;  32966 MW;  0D733352776272EB CRC64;
148     MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT
149     ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG
150     GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHALEL
151     LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI
152     NSNQRAQDNN DDMNGASRVL FPFSDMKELS STTQEKSHGN NTYWNGMFSN TGGSSW
153//
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