OpenBio*: aj224122.swiss

ID   DOF37_ARATH             Reviewed;         296 AA.
AC   Q43385; Q8GYW3; Q9SAF9;
DT   19-OCT-2002, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2001, sequence version 2.
DT   04-DEC-2007, entry version 60.
DE   Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination
DE   1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a).
GN   Name=DOF3.7; Synonyms=BBFA, DAG1; OrderedLocusNames=At3g61850;
GN   ORFNames=F21F14.20;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1).
RC   STRAIN=cv. Columbia, and cv. Wassilewskija;
RX   MEDLINE=96367665; PubMed=8771779;
RA   de Paolis A., Sabatini S., de Pascalis L., Costantino P., Capone I.;
RT   "A rolB regulatory factor belongs to a new class of single zinc finger
RT   plant proteins.";
RL   Plant J. 10:215-223(1996).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
RC   STRAIN=cv. Wassilewskija;
RX   MEDLINE=20107030; PubMed=10640273;
RA   Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P.,
RA   Vittorioso P.;
RT   "Identification and disruption of an Arabidopsis zinc finger gene
RT   controlling seed germination.";
RL   Genes Dev. 14:28-33(2000).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   MEDLINE=21016720; PubMed=11130713; DOI=10.1038/35048706;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
RA   Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
RA   Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
RA   De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
RA   Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
RA   Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
RA   Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
RA   Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
RA   Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
RA   Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
RA   Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
RA   Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
RA   Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
RA   Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
RA   Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
RA   Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
RA   Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
RA   Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
RA   Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
RA   Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
RA   Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
RA   Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
RA   Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:820-822(2000).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   STRAIN=cv. Columbia;
RX   MEDLINE=21932900; PubMed=11910074; DOI=10.1126/science.1071006;
RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA   Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
RA   Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
RA   Shibata K., Shinagawa A., Shinozaki K.;
RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL   Science 296:141-145(2002).
RN   [5]
RP   CHARACTERIZATION.
RX   MEDLINE=21831160; PubMed=11842145; DOI=10.1104/pp.010488;
RA   Papi M., Sabatini S., Altamura M.M., Hennig L., Schaefer E.,
RA   Costantino P., Vittorioso P.;
RT   "Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects
RT   response to light and integrity of the testa of Arabidopsis seeds.";
RL   Plant Physiol. 128:411-417(2002).
RN   [6]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   MEDLINE=22364319; PubMed=12475498; DOI=10.1016/S1360-1385(02)02362-2;
RA   Yanagisawa S.;
RT   "The Dof family of plant transcription factors.";
RL   Trends Plant Sci. 7:555-560(2002).
CC   -!- FUNCTION: Transcription factor specifically involved in the
CC       maternal control of seed germination. Regulates transcription by
CC       binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the
CC       inactivity of a component that would be activated to trigger
CC       germination as a consequence of red light perception.
CC   -!- SUBCELLULAR LOCATION: Nucleus (Probable).
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q43385-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q43385-2; Sequence=VSP_008898;
CC         Note=No experimental confirmation available;
CC   -!- TISSUE SPECIFICITY: Expressed in the phloem of the mother plant,
CC       including in roots, stem, leaves and flowers, but not present in
CC       the seed and embryo. In maturing siliques, found all through the
CC       funiculus connecting the placenta to the ovule, but not in the
CC       ovule.
CC   -!- DEVELOPMENTAL STAGE: Turned off in siliques when they reached full
CC       maturation. Not expressed in developing or mature embryos.
CC   -!- MISCELLANEOUS: The regulatory role of DOF3.7/DAG1 appears to be
CC       opposite to that of DOF2.5/DAG2. Both zinc finger proteins may act
CC       on a maternal switch that controls seed germination, possibly by
CC       regulating the same gene(s).
CC   -!- SIMILARITY: Contains 1 Dof-type zinc finger.
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DR   EMBL; X97941; CAA66600.2; -; mRNA.
DR   EMBL; AJ224122; CAB40190.1; -; Genomic_DNA.
DR   EMBL; AL138642; CAB71892.1; -; Genomic_DNA.
DR   EMBL; AK117352; BAC42022.1; -; mRNA.
DR   PIR; T47977; T47977.
DR   RefSeq; NP_191744.1; -.
DR   UniGene; At.989; -.
DR   TRANSFAC; T02699; -.
DR   GeneID; 825358; -.
DR   GenomeReviews; BA000014_GR; AT3G61850.
DR   KEGG; ath:AT3G61850; -.
DR   GeneFarm; 4410; 446.
DR   TAIR; At3g61850; -.
DR   ArrayExpress; Q43385; -.
DR   GermOnline; AT3G61850; Arabidopsis thaliana.
DR   InterPro; IPR003851; Znf_Dof.
DR   Pfam; PF02701; zf-Dof; 1.
DR   PROSITE; PS01361; ZF_DOF_1; 1.
DR   PROSITE; PS50884; ZF_DOF_2; 1.
PE   1: Evidence at protein level;
KW   Alternative splicing; Complete proteome; DNA-binding; Germination;
KW   Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc;
KW   Zinc-finger.
FT   CHAIN         1    296       Dof zinc finger protein DOF3.7.
FT                                /FTId=PRO_0000074283.
FT   ZN_FING      74    128       Dof-type.
FT   COMPBIAS    173    176       Poly-His.
FT   VAR_SEQ       1     12       Missing (in isoform 2).
FT                                /FTId=VSP_008898.
SQ   SEQUENCE   296 AA;  32966 MW;  0D733352776272EB CRC64;
     MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT
     ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG
     GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHALEL
     LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI
     NSNQRAQDNN DDMNGASRVL FPFSDMKELS STTQEKSHGN NTYWNGMFSN TGGSSW
//