Version 13 (modified by ktym, 10 years ago)

--

BioHackathon 2008

Towards integrated web service in life science with Open Bio* libraries.

Objectives

  • Standardizing the objects and methods in bioinformatics web services.

Venue

  • Tokyo, Japan
  • Candidate dates:
    1. 2008/02/10-02/16
    2. 2008/01/27-02/02
    3. 2008/02/03-02/09

Attendees

  • Toshiaki Katayama (Univ of Tokyo, Japan; BioRuby, KEGG API, KEGG DAS)
  • Hideaki Sugawara (DDBJ, Japan; DDBJ XML)
  • Alberto Labarga (Integromics, Spain; ex-EBI)
  • Matthew Pocock (Newcastle, UK; Taverna, BioJava?)
  • Sophia Ananiadou (Manchester, UK; Text mining)
  • Kazuharu Arakawa (Keio Univ, Japan; E-Cell, G-language)
  • Mitsuteru Nakao (Kazusa DNA Res, Japan; BioRuby)
  • Naohisa Goto (Osaka Univ, Japan; BioRuby)
  • Shuichi Kawashima (Univ of Tokyo, Japan; KEGG API)
  • Yasunori Yamamoto (DBCLS, Japan; Text mining)
  • Atsuko Yamaguchi (DBCLS, Japan)

Under consideration:

  • Tom Oinn (Taverna/myGrid)
  • Mark Wilkinson (BioMOBY)
  • Lincoln Stein (BioPerl?, BioMOBY, BioDAS)
  • Martin Senger (BioPerl?, EBI WS)
  • Heikki Lehvaslaiho (BioPerl?)
  • Jason Stajich (BioPerl?)
  • Chiris Dagdigian (O|B|F)
  • Darin London (O|B|F)
  • Win Hide
  • Suzanna Lewis
  • Ewan Birney (BioPerl?, Ensembl)
  • Hilmar Lapp (BioPerl?)
  • Aaron J Mackey (BioPerl?)
  • Elia Stupka (BioPerl?)
  • Jeffrey Chang (BioPython?)
  • Brad Chapman (BioPython?)
  • Andrew Dalke (BioPython?)
  • Christian Zmasek (BioRuby)
  • Jan Aerts (BioRuby)
  • Alex Gutteridge (BioRuby)
  • Pjotr Prins (BioRuby)
  • Keiichiro Ohno (Cytoscape)
  • Funahashi (SBML)
  • Nagamura? (BioMOBY) www.nias.affrc.go.jp
  • Shigemoto (DDBJ XML)
  • Nishizawa (IMS/DBCLS/CBRC; PDBj)
  • Sato (IMS/DBCLS/CBRC)
  • Maekawa (IMS/DBCLS/CBRC)

and more...

If you could recommend any appropriate persons from the following groups, please let me know:

  • NCBI web service developers
  • BioMOBY service developers (I found some interesting providers in Spain)
  • BioPerl?, BioPython?, and BioJava? developers

Starting Points

For a complete list of local wiki pages, see TitleIndex.

Attachments