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= !BioJava Domain Model =

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== Overview ==

Richard Holland and Richard Bruskiewich attempted to capture the !BioJava object model in UML diagrams. These diagrams are presented on this page (a simply UML tool called [http://horstmann.com/violet/ VioletUML] was used...).

The end result is only a semi-compliant UML diagram for general discussion and comparison to other such diagrams (e.g. for BioPerl and BioSQL) but is not computable (no XMI...)... Sorry :-)

== UML Models ==

=== org.biojavax ===

[[Image(org.biojavax.png)]]

=== org.biojavax.ontology ===

[[Image(org.biojavax.ontology.png)]]

=== org.biojavax.bio ===

[[Image(org.biojavax.bio.png)]]

=== org.biojavax.bio.taxa ===

[[Image(org.biojavax.bio.taxa.png)]]

=== org.biojavax.bio.seq ===

[[Image(org.biojavax.bio.seq.png)]]

=== org.biojavax.bio.seq.location ===

[[Image(org.biojavax.bio.seq.location.png)]]

=== org.biojavax.bio.seq.sequence ===

[[Image(org.biojavax.bio.seq.sequence.png)]]

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