Changes between Version 2 and Version 3 of BioPerlRoundTripSecondPass

Timestamp:

2008/02/13 12:20:42 (16 years ago)

Author:

heikki

Comment:

--

BioPerlRoundTripSecondPass

@@ -21 +21 @@
    * The downloaded sequence file was mysteriously mangled. New file uploaded. Parser works.
    * '''Note:''' EMBL format does not have a separate name any more. The primary accession number is now the name on the ID line.
- * MAJOR: OX line for !TaxId is lost
+ * ~~MAJOR: OX line for !TaxId is lost~~
+   * An other error caused by the mangled entry
+   * The FT key '''source''' contains qualifier db_xref to the taxon
  * minor: only the actual date on the DT (date) line is kept, release information and document version is lost.
    * '''Note:''' We now track only the sequence version from the ID line, not the document version from the second DT line.
-   * '''Note:''' BioSQL can store both versions. Should we update the BioPerl Bio::Seq::RichSeqI API to have document version, too?
+   * '''Note:''' BioSQL can store both versions. Should we update the !BioPerl Bio::Seq::RichSeqI API to have document version, too?
 {{{
 DT   27-FEB-1998 (Rel. 54, Created)
@@ -46 +48 @@
 
  * MAJOR: SOURCE line adds full stop to the end of the line (following old genbank conversion?)
- * minor: line BASE not present in recent genbank file, still generated by bioperl
+ * minor: line BASE not present in recent genbank file, still generated by !BioPerl
  * minor: features are not returned in order