Changes between Version 7 and Version 8 of BioPerlRoundTripSecondPass

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Timestamp:
2008/02/13 17:30:14 (17 years ago)
Author:
heikki
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  • BioPerlRoundTripSecondPass

    v7 v8  
    55 
    66Based on bioperl-live SVN revision 14501. 
     7 
     8I noticed that it is not enough to read in a database entry and write it out. You also must be able to read the first output and finally write out the second output file and show that is identical (or near enough) to the original entry. The similarities of this process to [http://en.wikipedia.org/wiki/Koch's_postulates Koch's postulates] are clear. :) 
     9 
    710 
    811!BioPerl does not have parsers for these formats: 
    … …  
    8588 * minor: FTid sometimes not written on its own line 
    8689 * minor: extra space written to the end of the sequence line 
    87    *'''Note:''' All these extra spaces at the end of the line  come from _write_line_swissprot_regex(). Check if this can be fixed! 
     90   * '''Note:''' All these extra spaces at the end of the line  come from _write_line_swissprot_regex(). Check if this can be fixed! 
    8891