BioHackathon 2008 meeting topics

New version

• OpenBio* & Web Service Semantics - Richard Bruskiewich
  • domain models & ontology: data types, service types and model API
• standardization
  • Glycoinformatics - Will York
  • Interaction networks, DAS - Bruno Aranda
  • Text Mining, Text mining - Kano
  • Phyloinformatics - Hilmar Lapp
• Async services - José Mª Fernández
  • WSRF?
• Large data - Tom Oinn
  • SOAP attachements
  • BioShare
• Security - Oswaldo Trelles
• Description & Discovery - Mark Wilkinson
• OpenBio*
  • BioSQL - Mark Schreiber
  • BioProjects comparison - Pjotr Prins

• Writing (creating) interoperable workflows - Tom Oinn, Stuart Owen
• Writing the manifesto

• BioRuby
  • BiorubyFormats

• PDBj-DDBJ-KEGG

• Testing BioMoby with Perl - Kazuharu Arakawa & Hiroyuki Nakamura

• AdHoc Report on Japanese Agricultural/Rice Information Resource Integration - Richard Bruskiewich

Old version : Proposed by the organizers

List of tentative meeting topics for the web service providers, the Open Bio* developers, the workflow client developers, and the BioMOBY project:

• ServiceProvider_workgroup
• OpenBio_workgroup
• Workflow_workgroup
• BioMOBY_workgroup

You can freely add your proposals here.

• Exchangeformat_workgroup
  • Bio* clients <-> WSDL or BioMOBY objects <-> BioSQL/OBO
    • Sequences, Phyloinformatics, Glycoinformatics, Interaction network, DAS annotations, ...
• Semanticweb_workgroup
  • SSWAP, OWL-DL, ...
• PhyloWS_workgroup
  • Web-Services API for querying taxonomic databases and databases of phylogenetic trees
  • Using SOAP, REST, and/or BioMOBY
• Distributed storage - initiative (BIO.SLURP)
• Distributed services - initiative (BIO.ORG.ANISM)