Changes between Version 10 and Version 11 of PhyloWS_workgroup

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Timestamp:
2008/02/12 12:21:03 (17 years ago)
Author:
czmasek
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  • PhyloWS_workgroup

    v10 v11  
    1818The Open Space discussion centered on the following issues: 
    1919 * The OTU (Operational Taxonomic Unit) perspective is an important use-case.  
     20  * Gene tree analysis: splitting a given a set of trees into subsets of trees as a function of compatibility to a given (set of) species tree(s).   
    2021  * Gene tree analysis: similar to the Zmasek et al (2007) paper, one may want to build alignments and phylogenetic trees for all ortholog families of a  gene family, or a pathway. After loading the trees into a database, one could then query the database for those gene trees that support a certain species phylogeny, for example the Ecdysizoan hypothesis. 
    2122   * Problem: the query topology will be given with either gene name labels, or species name labels, but the labels of the trees will be OTUs.