Changes between Version 5 and Version 6 of Text Mining
- Timestamp:
- 2009/01/19 01:51:54 (16 years ago)
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Text Mining
v5 v6 17 17 18 18 == NLP Web services for Bioinformatics == 19 20 Interoperability Frameworks related to NLP/TM 21 * UIMA (Unstructured Information Management Architecture) 22 * [http://incubator.apache.org/uima/ Apache UIMA] (open source reference implementation) 23 * [http://www.oasis-open.org/committees/uima/ OASIS UIMA committee] (open specification) 24 * [http://gate.ac.uk/ GATE], an NLP platform by Shefield University 25 26 Common Issues 19 27 * How to relate with UIMA 20 28 * How to set the granularity of services 21 * Provide each NLP moduleas web service22 * Typical module pipeline at NLP:29 * Provide each/some of NLP modules as web service 30 * Typical module pipeline at NLP, e.g.: 23 31 {{{ 24 [Document] -> [Sentence Detection] -> [Tokenize] -> [POS Tagging] -> [Protein name detection] -> [Protei-protein interaction detection] 32 [Document] -> [Sentence Detection] -> [Tokenize] -> [POS Tagging] -> 33 [Protein name detection] -> [Protei-protein interaction detection] 25 34 }}} 26 35 * Provide integrated service 27 36 28 Some integrated services are available as well as each NLP module. 37 Examples of Available Integrated Services and/or NLP Modules 29 38 30 [http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/home/wiki.cgi GENIA project] 39 * [http://u-compare.org/ U-Compare initiative] 40 * UIMA compliant, web distributed integrated system 41 * a large collection of interoperable web/local services 42 * a joint project between the University of Tokyo, UK National Centre for Text Mining (NaCTeM), the University of Colorado Health Science Center. 43 44 * [http://www.nactem.ac.uk/services.php NaCTeM services] 31 45 32 [http://www.nactem.ac.uk/services.php NaCTeM services] 33 34 Related existing TM WS is [http://www.ihop-net.org/ iHOP], which is in the BioMOBY directory. 46 * Related existing TM WS is [http://www.ihop-net.org/ iHOP], which is in the BioMOBY directory.