BioHackathon 2008

Towards integrated web service in life science with Open Bio* libraries.

Objectives

• Standardizing the objects and methods in bioinformatics web services.

• CallForParticipation

Venue

• Tokyo, Japan
• Candidate dates:
  1. 2008/02/10-02/16
  2. 2008/01/27-02/02
  3. 2008/02/03-02/09

Attendees

• ListOfAttendies

• Toshiaki Katayama (Univ of Tokyo, Japan; BioRuby, KEGG API, KEGG DAS)
• Hideaki Sugawara (DDBJ, Japan; DDBJ XML)
• Alberto Labarga (Integromics, Spain; ex-EBI)
• Matthew Pocock (Newcastle, UK; Taverna, BioJava?)
• Sophia Ananiadou (Manchester, UK; Text mining)
• Kazuharu Arakawa (Keio Univ, Japan; E-Cell, G-language)
• Mitsuteru Nakao (Kazusa DNA Res, Japan; BioRuby)
• Naohisa Goto (Osaka Univ, Japan; BioRuby)
• Shuichi Kawashima (Univ of Tokyo, Japan; KEGG API)
• Yasunori Yamamoto (DBCLS, Japan; Text mining)
• Atsuko Yamaguchi (DBCLS, Japan)

Under consideration:

• Tom Oinn (Taverna/myGrid)
• Mark Wilkinson (BioMOBY)
• Lincoln Stein (BioPerl?, BioMOBY, BioDAS)
• Martin Senger (BioPerl?, EBI WS)
• Heikki Lehvaslaiho (BioPerl?)
• Jason Stajich (BioPerl?)
• Chiris Dagdigian (O|B|F)
• Darin London (O|B|F)
• Win Hide
• Suzanna Lewis
• Ewan Birney (BioPerl?, Ensembl)
• Hilmar Lapp (BioPerl?)
• Aaron J Mackey (BioPerl?)
• Elia Stupka (BioPerl?)
• Jeffrey Chang (BioPython?)
• Brad Chapman (BioPython?)
• Andrew Dalke (BioPython?)
• Christian Zmasek (BioRuby)
• Jan Aerts (BioRuby)
• Alex Gutteridge (BioRuby)
• Pjotr Prins (BioRuby)
• Keiichiro Ohno (Cytoscape)
• Funahashi (SBML)
• Nagamura? (BioMOBY) www.nias.affrc.go.jp
• Shigemoto (DDBJ XML)
• Nishizawa (IMS/DBCLS/CBRC; PDBj)
• Sato (IMS/DBCLS/CBRC)
• Maekawa (IMS/DBCLS/CBRC)

and more...

If you could recommend any appropriate persons from the following groups, please let me know:

• NCBI web service developers
• BioMOBY service developers (I found some interesting providers in Spain)
• BioPerl?, BioPython?, and BioJava? developers

Starting Points

• TracGuide -- Built-in Documentation
•  The Trac project -- Trac Open Source Project
•  Trac FAQ -- Frequently Asked Questions
• TracSupport -- Trac Support

For a complete list of local wiki pages, see TitleIndex.