Version 2 (modified by jan.aerts, 11 years ago)


Random ideas from Jan Aerts

Mind that this is *very* incomplete. Just to help my really bad memory. As the issue is interoperability of the Bio* toolkits, we don't have to synchronise the toolkits at the object level, but rather at the interface level. So let's see if each toolkit reads and writes a GenBank/Fasta/... serialization in the same way. Input can either be an original GenBank/Fasta/... file or a dbfetch from any database.

  • What should be conserved:
    • Tags
    • for a sequence: lower/uppercase
  • What not necessarily should be conserved:
    • for a sequence over multiple lines: length of each line

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